| Family | Species | FishBase name | Threat Category | Occurrence | Photo |
|---|---|---|---|---|---|
| Aetobatidae | Aetobatus ocellatus | Ocellated eagle ray | Vulnerable (VU) | native | |
| Myliobatidae | Aetomylaeus vespertilio | Ornate eagle ray | Endangered (EN) | native | |
| Microdesmidae | Aioliops brachypterus | Shortfin minidartfish | Vulnerable (VU) | native | |
| Alopiidae | Alopias pelagicus | Pelagic thresher | Endangered (EN) | native | |
| Alopiidae | Alopias superciliosus | Bigeye thresher | Vulnerable (VU) | native | |
| Alopiidae | Alopias vulpinus | Thresher | Vulnerable (VU) | native | |
| Pomacentridae | Altrichthys azurelineatus | Azure damselfish | Vulnerable (VU) | native | |
| Pomacentridae | Altrichthys curatus | Guardian damselfish | Vulnerable (VU) | native | |
| Pomacentridae | Amblyglyphidodon batunaorum | Batuna's damselfish | Vulnerable (VU) | native | |
| Pomacentridae | Amblyglyphidodon ternatensis | Ternate damsel | Vulnerable (VU) | native | |
| Anguillidae | Anguilla japonica | Japanese eel | Endangered (EN) | native | |
| Anguillidae | Anguilla luzonensis | Vulnerable (VU) | native | | |
| Pristidae | Anoxypristis cuspidata | Pointed sawfish | Critically Endangered (CR) | native | |
| Atherinidae | Atherinomorus lineatus | Lined silverside | Vulnerable (VU) | native | |
| Cyprinidae | Barbodes cataractae | Critically Endangered (CR) | endemic | No picture yet. | |
| Cyprinidae | Barbodes hemictenus | Vulnerable (VU) | endemic | No picture yet. | |
| Cyprinidae | Barbodes ivis | Vulnerable (VU) | endemic | No picture yet. | |
| Cyprinidae | Barbodes joaquinae | Critically Endangered (CR) | endemic | No picture yet. | |
| Cyprinidae | Barbodes lindog | Critically Endangered (CR) | endemic | | |
| Cyprinidae | Barbodes manguaoensis | Critically Endangered (CR) | endemic | | |
| Cyprinidae | Barbodes montanoi | Endangered (EN) | endemic | No picture yet. | |
| Cyprinidae | Barbodes sirang | Critically Endangered (CR) | endemic | | |
| Cyprinidae | Barbodes tumba | Endangered (EN) | endemic | | |
| Cyprinidae | Barbodes umalii | Endangered (EN) | endemic | No picture yet. | |
| Dasyatidae | Bathytoshia lata | Brown stingray | Vulnerable (VU) | native | |
| Scaridae | Bolbometopon muricatum | Green humphead parrotfish | Vulnerable (VU) | native | |
| Butidae | Bostrychus expatria | Critically Endangered (CR) | endemic | | |
| Gobiidae | Caecogobius cryptophthalmus | Critically Endangered (CR) | endemic | No picture yet. | |
| Carcharhinidae | Carcharhinus albimarginatus | Silvertip shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus amblyrhynchoides | Graceful shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus amblyrhynchos | Blacktail reef shark | Endangered (EN) | native | |
| Carcharhinidae | Carcharhinus brevipinna | Spinner shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus falciformis | Silky shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus hemiodon | Pondicherry shark | Critically Endangered (CR) | native | |
| Carcharhinidae | Carcharhinus leucas | Bull shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus limbatus | Blacktip shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus longimanus | Oceanic whitetip shark | Critically Endangered (CR) | native | |
| Carcharhinidae | Carcharhinus melanopterus | Blacktip reef shark | Vulnerable (VU) | native | |
| Carcharhinidae | Carcharhinus sealei | Blackspot shark | Vulnerable (VU) | native | |
| Carchariidae | Carcharias taurus | Sand tiger shark | Critically Endangered (CR) | native | |
| Lamnidae | Carcharodon carcharias | Great white shark | Vulnerable (VU) | native | |
| Centrophoridae | Centrophorus granulosus | Gulper shark | Endangered (EN) | native | |
| Centrophoridae | Centrophorus isodon | Blackfin gulper shark | Endangered (EN) | native | |
| Centrophoridae | Centrophorus lusitanicus | Lowfin gulper shark | Vulnerable (VU) | native | |
| Centrophoridae | Centrophorus moluccensis | Smallfin gulper shark | Vulnerable (VU) | native | |
| Centrophoridae | Centrophorus squamosus | Leafscale gulper shark | Endangered (EN) | native | |
| Ariidae | Cephalocassis manillensis | Endangered (EN) | endemic | | |
| Labridae | Cheilinus undulatus | Humphead wrasse | Endangered (EN) | native | |
| Chimaeridae | Chimaera phantasma | Silver chimaera | Vulnerable (VU) | native | |
| Clupeidae | Clupea manulensis | Critically Endangered (CR) | endemic | No picture yet. | |
| Cyprinidae | Cyclocheilichthys schoppeae | Endangered (EN) | endemic | No picture yet. | |
| Zenarchopteridae | Dermogenys palawanensis | Vulnerable (VU) | endemic | | |
| Blenniidae | Ecsenius kurti | Kurt's coralblenny | Vulnerable (VU) | endemic | |
| Blenniidae | Ecsenius tricolor | Tricolor coralblenny | Vulnerable (VU) | native | |
| Epinephelidae | Epinephelus bruneus | Longtooth grouper | Vulnerable (VU) | native | |
| Epinephelidae | Epinephelus fuscoguttatus | Brown-marbled grouper | Vulnerable (VU) | native | |
| Epinephelidae | Epinephelus polyphekadion | Camouflage grouper | Vulnerable (VU) | native | |
| Sphyrnidae | Eusphyra blochii | Winghead shark | Endangered (EN) | native | |
| Sparidae | Evynnis cardinalis | Threadfin porgy | Endangered (EN) | native | |
| Gobiidae | Exyrias volcanus | Critically Endangered (CR) | endemic | No picture yet. | |
| Glaucostegidae | Glaucostegus typus | Giant shovelnose ray | Critically Endangered (CR) | native | |
| Gobiidae | Gobiodon aoyagii | Vulnerable (VU) | native | | |
| Gobiidae | Gobiodon fulvus | Vulnerable (VU) | native | No picture yet. | |
| Phallostethidae | Gulaphallus bikolanus | Endangered (EN) | endemic | No picture yet. | |
| Phallostethidae | Gulaphallus eximius | Vulnerable (VU) | endemic | No picture yet. | |
| Gymnuridae | Gymnura japonica | Japanese butterflyray | Vulnerable (VU) | native | |
| Gymnuridae | Gymnura poecilura | Long-tailed butterfly ray | Vulnerable (VU) | native | |
| Gymnuridae | Gymnura zonura | Zonetail butterfly ray | Endangered (EN) | native | |
| Cyprinidae | Hampala lopezi | Endangered (EN) | native | No picture yet. | |
| Hemigaleidae | Hemigaleus microstoma | Sicklefin weasel shark | Vulnerable (VU) | native | |
| Hemigaleidae | Hemipristis elongata | Snaggletooth shark | Vulnerable (VU) | native | |
| Triakidae | Hemitriakis leucoperiptera | Whitefin topeshark | Critically Endangered (CR) | endemic | |
| Dasyatidae | Himantura leoparda | Vulnerable (VU) | native | | |
| Dasyatidae | Himantura uarnak | Honeycomb stingray | Endangered (EN) | native | |
| Syngnathidae | Hippocampus barbouri | Barbour's seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus comes | Tiger tail seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus histrix | Thorny seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus kelloggi | Great seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus kuda | Spotted seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus spinosissimus | Hedgehog seahorse | Vulnerable (VU) | native | |
| Syngnathidae | Hippocampus trimaculatus | Longnose seahorse | Vulnerable (VU) | native | |
| Lamnidae | Isurus oxyrinchus | Shortfin mako | Endangered (EN) | native | |
| Terapontidae | Leiopotherapon plumbeus | Vulnerable (VU) | endemic | | |
| Dasyatidae | Maculabatis macrura | Endangered (EN) | native | No picture yet. | |
| Syngnathidae | Microphis pleurostictus | Endangered (EN) | endemic | No picture yet. | |
| Gobiidae | Mistichthys luzonensis | Sinarapan | Vulnerable (VU) | endemic | |
| Mobulidae | Mobula alfredi | Alfred manta | Vulnerable (VU) | native | |
| Mobulidae | Mobula birostris | Giant manta | Endangered (EN) | native | |
| Mobulidae | Mobula eregoodootenkee | Longhorned mobula | Endangered (EN) | native | |
| Mobulidae | Mobula kuhlii | Shortfin devil ray | Endangered (EN) | native | |
| Mobulidae | Mobula mobular | Devil fish | Endangered (EN) | native | |
| Mobulidae | Mobula tarapacana | Chilean devil ray | Endangered (EN) | native | |
| Mobulidae | Mobula thurstoni | Smoothtail mobula | Endangered (EN) | native | |
| Molidae | Mola mola | Ocean sunfish | Vulnerable (VU) | native | |
| Gobiidae | Mugilogobius cagayanensis | Endangered (EN) | endemic | No picture yet. | |
| Narcinidae | Narcine lingula | Chinese numbfish | Vulnerable (VU) | native | |
| Narcinidae | Narcine maculata | Darkfinned numbfish | Vulnerable (VU) | native | |
| Narcinidae | Narcine timlei | Spotted numbfish | Vulnerable (VU) | native | |
| Ginglymostomatidae | Nebrius ferrugineus | Tawny nurse shark | Vulnerable (VU) | native | |
| Carcharhinidae | Negaprion acutidens | Sicklefin lemon shark | Endangered (EN) | native | |
| Nemipteridae | Nemipterus virgatus | Golden threadfin bream | Vulnerable (VU) | native | |
| Phallostethidae | Neostethus ctenophorus | Critically Endangered (CR) | endemic | No picture yet. | |
| Phallostethidae | Neostethus robertsi | Critically Endangered (CR) | endemic | No picture yet. | |
| Phallostethidae | Neostethus thessa | Endangered (EN) | endemic | No picture yet. | |
| Zenarchopteridae | Nomorhamphus rossi | Endangered (EN) | endemic | No picture yet. | |
| Rajidae | Okamejei meerdervoortii | Bigeye skate | Vulnerable (VU) | native | |
| Adrianichthyidae | Oryzias luzonensis | Endangered (EN) | endemic | | |
| Monacanthidae | Oxymonacanthus longirostris | Harlequin filefish | Vulnerable (VU) | native | |
| Dinematichthyidae | Paradiancistrus cuyoensis | Cuyo coralbrotula | Vulnerable (VU) | endemic | |
| Dasyatidae | Pastinachus ater | Broad cowtail ray | Vulnerable (VU) | native | |
| Dasyatidae | Pateobatis fai | Pink whipray | Vulnerable (VU) | native | |
| Dasyatidae | Pateobatis jenkinsii | Jenkins whipray | Vulnerable (VU) | native | |
| Epinephelidae | Plectropomus areolatus | Squaretail coralgrouper | Vulnerable (VU) | native | |
| Ariidae | Plicofollis magatensis | Vulnerable (VU) | endemic | No picture yet. | |
| Pristidae | Pristis zijsron | Longcomb sawfish | Critically Endangered (CR) | native | |
| Danionidae | Rasbora lateristriata | Yellow rasbora | Vulnerable (VU) | native | |
| Danionidae | Rasbora taytayensis | Vulnerable (VU) | endemic | No picture yet. | |
| Scombridae | Rastrelliger brachysoma | Short mackerel | Vulnerable (VU) | native | |
| Scombridae | Rastrelliger faughni | Island mackerel | Vulnerable (VU) | native | |
| Gobiidae | Redigobius dispar | Vulnerable (VU) | native | No picture yet. | |
| Rhinidae | Rhina ancylostomus | Bowmouth guitarfish | Critically Endangered (CR) | native | |
| Rhincodontidae | Rhincodon typus | Whale shark | Endangered (EN) | native | |
| Rhinobatidae | Rhinobatos whitei | Philippine guitarfish | Critically Endangered (CR) | native | No picture yet. |
| Gobiidae | Rhinogobius bucculentus | Vulnerable (VU) | endemic | No picture yet. | |
| Rhinopteridae | Rhinoptera javanica | Flapnose ray | Endangered (EN) | native | |
| Rhinopteridae | Rhinoptera jayakari | Oman cownose ray | Endangered (EN) | native | |
| Carcharhinidae | Rhizoprionodon acutus | Milk shark | Vulnerable (VU) | native | |
| Rhinidae | Rhynchobatus australiae | Bottlenose wedgefish | Critically Endangered (CR) | native | |
| Rhinidae | Rhynchobatus springeri | Broadnose wedgefish | Critically Endangered (CR) | native | |
| Dorosomatidae | Sardinella tawilis | Freshwater sardinella | Endangered (EN) | endemic | |
| Gobiidae | Schismatogobius insignis | Endangered (EN) | native | No picture yet. | |
| Sphyrnidae | Sphyrna lewini | Scalloped hammerhead | Critically Endangered (CR) | native | |
| Sphyrnidae | Sphyrna mokarran | Great hammerhead | Critically Endangered (CR) | native | |
| Sphyrnidae | Sphyrna zygaena | Smooth hammerhead | Vulnerable (VU) | native | |
| Squalidae | Squalus japonicus | Japanese spurdog | Endangered (EN) | native | |
| Squalidae | Squalus montalbani | Philippiines spurdog | Vulnerable (VU) | native | |
| Stegostomatidae | Stegostoma tigrinum | Zebra shark | Endangered (EN) | native | |
| Gobiidae | Stenogobius kyphosus | Vulnerable (VU) | endemic | No picture yet. | |
| Gobiidae | Stigmatogobius elegans | Endangered (EN) | endemic | | |
| Gobiidae | Stiphodon pulchellus | Vulnerable (VU) | endemic | No picture yet. | |
| Dasyatidae | Taeniurops meyeni | Round ribbontail ray | Vulnerable (VU) | native | |
| Gobiidae | Tamanka siitensis | Endangered (EN) | endemic | No picture yet. | |
| Scombridae | Thunnus obesus | Bigeye tuna | Vulnerable (VU) | native | |
| Carcharhinidae | Triaenodon obesus | Whitetip reef shark | Vulnerable (VU) | native | |
| Dasyatidae | Urogymnus asperrimus | Porcupine whipray | Vulnerable (VU) | native | |
| Dasyatidae | Urogymnus granulatus | Mangrove whipray | Vulnerable (VU) | native | |
| Soleidae | Zebrias lucapensis | Vulnerable (VU) | endemic | No picture yet. |