| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Adma River | River (basin) | native | 89719 |
| Brahmaputra | River (basin) | native | 4832 |
| Buxa River | River (basin) | native | 89719 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Choto Jamuna | River (basin) | native | 100698 |
| Ganges | River (basin) | native | 7431 |
| Indus | River (basin) | native | 7431 |
| Jayanti River | River (basin) | native | 89719 |
| Laguna de Bay | Lake | introduced | 94176 |
| Oriental | Zoogeographic realm | endemic | 7431 |
| Tonle Sap | Lake | misidentification | 36654 |