| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 3476 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 3476 |
| East China Sea | Sea/Bay/Gulf | native | 11230 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 33390 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 13277 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3476 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3476 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3476 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3476 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3476 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Red Sea | Sea/Bay/Gulf | native | 12541 |
| Ruerhmen River | River (basin) | native | 36073 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 11230 |
| Shihtsao River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 3476 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Yangtze Estuary | Sea/Bay/Gulf | native | 117603 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |