| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5222 |
| Andaman Sea | Sea/Bay/Gulf | native | 5222 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5222 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5222 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Indian Ocean | Sea/Bay/Gulf | native | 5222 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5222 |
| Kuroshio Current | Sea/Bay/Gulf | native | 4787 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 4787 |
| Polynesian Waters | Sea/Bay/Gulf | native | 5222 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 5222 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 4787 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5222 |