| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 4343 |
| Ethiopian | Zoogeographic realm | native | 4343 |
| Godavari | River (basin) | native | 51036 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 37816 |
| Indian Ocean | Sea/Bay/Gulf | native | 4343 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Kaoping River | River (basin) | native | 36073 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| North Australian Shelf | Sea/Bay/Gulf | native | 33390 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 33390 |
| Oriental | Zoogeographic realm | native | 45255 |
| Pacific Ocean | Sea/Bay/Gulf | native | 33390 |
| Palearctic | Zoogeographic realm | native | 5193 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 129076 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 125515 |
| Tanshui River | River (basin) | native | 36073 |
| Tsengwen River | River (basin) | native | 36073 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |