| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 55 |
| Andaman Sea | Sea/Bay/Gulf | native | 55 |
| Arabian Sea | Sea/Bay/Gulf | native | 55 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bank 8 | Seamount | native | 35722 |
| Bank 9 | Seamount | native | 50505 |
| Bay of Bengal | Sea/Bay/Gulf | native | 55 |
| Brooks Banks | Seamount | native | 35722 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 55 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 55 |
| Indian Ocean | Sea/Bay/Gulf | native | 9821 |
| Indonesian Sea | Sea/Bay/Gulf | native | 55 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 55 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| North Australian Shelf | Sea/Bay/Gulf | native | 30874 |
| Northampton Seamount | Seamount | native | 35722 |
| Pacific Ocean | Sea/Bay/Gulf | native | 55 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 171 |
| Polynesian Waters | Sea/Bay/Gulf | native | 55 |
| Raita Bank | Seamount | native | 35722 |
| Saint Rogatien Bank | Seamount | native | 35722 |
| Salmon Bank | Seamount | native | 35722 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 55 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 55 |
| Yellow Sea | Sea/Bay/Gulf | native | 55 |