| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 2689 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48445 |
| Indian Ocean | Sea/Bay/Gulf | native | 2334 |
| Indonesian Sea | Sea/Bay/Gulf | native | 2689 |
| Kimbe Bay | Sea/Bay/Gulf | questionable | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2689 |
| Northeast Australian Shelf | Sea/Bay/Gulf | questionable | 2689 |
| Northwest Australian Shelf | Sea/Bay/Gulf | questionable | 2689 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Persian Gulf | Sea/Bay/Gulf | native | 2689 |
| Polynesian Waters | Sea/Bay/Gulf | questionable | 2689 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| South China Sea | Sea/Bay/Gulf | native | 4868 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | native | 37603 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |